Friday, January 29, 2016

Getting some work done

Been hard at work here, with some accomplishments to show for it.  Ingrid and I wrote and submitted a new pre-proposal for an NSF grant "Phylogenetic ecology of plant disease" that builds on work that we published in the Nature paper last year.  We are really excited about how those ideas developed, and the potential for that work, if it is funded.  It was great working together so intensely on developing the new ideas.  It was a ton of intense work over the last month - and then a server glitch made us start the long submission process over from scratch just a few hours before deadline.  But we made it, and I made brownies to celebrate the submission!  Now just need to forget it for a few months until it is reviewed. 

We each were also part of developing and submitting two other separate NSF pre-proposals, where we are senior personnel.  Fortunately our collaborators had the lead on those proposals, so that wasn't quite as much heavy lifting.

We heard that our Annual Review of Phytopathology chapter was accepted (although we still have some work on revising that), and now we are on to an article on invasions and disease for TREE with a couple new collaborators.    I've also be going back and forth over two articles with collaborators from China -- one submitted today, and another should be done in another round or two of revisions.   And I managed to submit the 120-page final report on my collaborative work with USDA APHIS. 

Right after we got back from Morocco I took the AVE to Barcelona to be part of a Doctoral Defense.  Quite a different process from what I'm used to.  The three of us on the Tribunal were not involved in his dissertation work except reading the final product.  He gave a 45 talk summarizing his work, with a public audience (including his family) while the Tribunal sat on a small elevated stage to the side.  After the talk, we each took about 30 min to grill him with questions about his dissertation (again, with mom, the aunts, and other family groupies listening in), then retreated to a separate room to discuss and write three separate reports while he waited.  Then back to the main room, read out the results, then head to a different place for a huge spread of food, cider, beer, and wine.  So glad he had done a really great job on the dissertation and the talk -- seems like a lot of potential for an uncomfortable situation.

After the exam I headed to Zaragoza to the Institute of Pyrenees Ecology, where Begoña García (the professor of the doctoral student) and her lab are doing great work in montane plant ecology and citizen science.  I gave a seminar there -- this time in Spanish -- about a combination of my work with Ingrid and the work in Panama.  Had a great time there and have continued conversations about potential collaborations.

Then the week after returning I gave a similar departmental seminar in Sevilla at the EBD, but this time in English because a number of visitors to the Estacíon don't speak Spanish.  It was fun giving the same talk in the two languages just a week apart.

Once we finish the TREE manuscript, due in a couple weeks, we'll be free of big deadlines and can get back to the data papers we really want to write! 

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We've had some good personal things too.   The Danes came to visit -- for less than 24 h -- and we did some touristing and eating with them, including going back to the Flamenco Museum for another spectacular show.

We continue to explore new places to tapear;  Eli really loved his first frog legs at the Sol y Sombra!

We've made a few fun new foods at home, including the spiny predatory marine snails called cañaillas (Bolinus brandaris) (ok, but not as good as other mollusks) and roast partridges (definitely will do that again).  Eli and Ingrid also had venison patties (=bambi burgers).

For those following the Bartonella saga, I've reached a great milestone.  Thursday was my last day of mycobutin, and I'll be winding down the other antibiotic, enzymes, supplements, and meds over the coming 6 weeks -- and should be completely done with treatments then!  Long haul since first symptoms from the infection in April 2014...





Wednesday, January 6, 2016

Moroccan excursion

One place we wanted to make sure to visit during this sabbatical was Morocco.  We managed to arrange for travel and tour on relatively short notice, and spent a week visiting souks, kasbahs, and the Saraha desert, and eating wonderful food.

We started in Marrakech in southern Morocco, spending the night in a beautiful renovated riad down a long, narrow alley in the old medina.  But early the next morning we drove east, passing through the Tizi n'Tichka pass (2260m)  across the High Atlas mountains to Ouarzazate, stopping at the Aït Benhaddou kasbah on the way.  They have had an unusually dry year, so rivers that should be running wildly were dry or trickles.


Still, the dry, rocky landscape was interspersed with  have lush agricultural production, with crops planted in sunken sections that could be flooded for irrigation.  Brassicas, wheat, vegetables, alfalfa, olives, citrus, and everywhere date palms.



Fresh produce was impressively available in the souks, with abundant legumes, grains, spices, and vegetables.

Goats were equally abundant, still herded by rapidly vanishing populations of nomads.  We spent the night in a lovely French riad in the oasis of Skoura, but saw little of the oasis because we arrived and left in the dark.


On 31 December, we drove south-east from Skoura for a long day through the Dades Valley, through Berber Villages, and the impressive Todra Gorge, stopping for stuffed Berber pizza in Rissani (medfouna tafilalt) and to buy indigo-dyed desert scarves, until arriving at Merzouga just before sunset.  There we  hustled to get our warm clothes, scarves, cameras, and us to where camels waited to take us out to a Tuareg Berber camp in the Erg Chebbi, the vast sea of shifting sand dunes.

The colors and shadows are impossible to describe.  The abundance of animal tracks in the sand contrasted with what seemed so empty.
We were surprised to find some cucurbits that had grown in basins that collect water from the rains, and occasional clumps of grasses.  But overall it was quiet; even the camels made little noise as they walked through the sand.  

Riding the camels was easier than expected - more motion than a horse, but smoother.  We only rode a little over an hour, and a very long day of riding might have been tough, but we arrived happy and with no complaints.    There we spent a lovely New Year's Eve in nomadic tents, the Mali-derived drum circle around a small campfire. 

We rode out of the dunes during the sunrise the next day, then began a very long drive north to the cultural capital of Fes.   Here we wandered, sometimes with guide, sometimes without, through the 9000 narrow alley ways that make up the city.

We browsed the shops and artisan stands, with their arrays of meats, spices, copper, ceramics, weavings, and leather, and dodged the donkeys, mules, carts, and motorcycles that speed down passages just wide enough to walk.


Many of the artisans produced goods for every day use, although some produced primarily for tourists.  The quality of the handcrafts was spectacular.  Elias and I watched the silk (from Agave) and wool weaving on the loom for a long time. 
We spent two nights in Fes, and could easily have spent more time wandering about. But this was also a place where a guide was needed.


We also saw lots of storks on minarets and roofs, and had that difficult talk with Elias about how babies are really delivered by storks.
The foods in the shops were not for tourists.  Interestingly, this camel shop sold only meat of the camels;  a separate shop sold the entrails.  We asked about the brains on display in one shop, and where it was served, but were told "We only eat brain for breakfast."

 Our last day we drove back south with a stop in Casablanca for a visit to the Hassan II Mosque, the 3rd largest in the world, and one of only two in Morocco that permits non-Muslims to visit.  A spectacular work of engineering, capable of holding 20,000 worshipers inside and another 80,000 outside.  The giant titanium doors (from Russia) made me think of what the environmental impact of the construction must have been.  But the space felt very special and sacred, and more so because it was built specifically to be open to visitors to help increase understanding of Islam among visitors. 



We shared a great meal of fried fish, squid, and shrimp with our guide and driver, and then headed back for our last evening in Marrakech.  We were so full from the fish lunch that we just wandered the Jemaa el Fna square (with the sister mosque to Sevilla's Giralda!), enjoyed the street performers and eating interesting foods from the stands.  The snails - served in a bowl with broth and toothpicks to each them - were amazingly delicious. Elias loved a sausage sandwich, and the fruit juices and pastries were great.



It was hard to say goodbye to our driver Hassan and our extremely talented guide Aziz from Moroccan Sun Tours (TripAdvisor  or directly at http://moroccosuntours.com/).  I can't recommend Aziz highly enough - for trekking or visiting cities and for a special talent in making Moroccan culture accessible to outsiders.  I hope we can return some day for more serious trekking with Aziz!


Tuesday, January 5, 2016

A brief visit to California

We had a busy two week visit to California.  First, a stop in Santa Cruz for a week to spend time with our Double Family Fiona-Kerstin-Bruce (plusScout and Houdini), and for a lot of UCSC activities as well.  We did a delayed Eli-birthday Segway tour along Westcliff on a day with spectacular surf; such a  perfect Santa Cruz activity. 

While we were in Santa Cruz my student Sharifa gave her Ph.D. exit seminar, with lots of family in attendance, and Juniper passed her Qualifying Exam.  I also got to spend some time with students Jessica and Shaneece, as well as an assortment of faculty and other colleagues.  It was a whirlwind, but great to see everyone doing so well.

Then we headed to southern California to split a week between my family in Claremont and Ingrid's family in Mission Viejo. 
It has been great that the families are all so close together, although that is changing, with my family moving to the Arizona desert soon.  We got to spend lots of quality family time, and snuck in a Christmas bird counts and a half-day in the field with my student Shannon chasing polyphagous shothole borers. 

Then two short weeks in California were gone, and we flew back to Sevilla, for a brief stopover before heading on to Morocco. 


Sunday, December 13, 2015

A busy month

A whole month has past since the last post -- not because nothing has happened but because we were too busy.  The biggest focus of attention was Ingrid and I finishing our chapter for the Annual Review of Phytopathology, titled The evolutionary ecology of plant disease: a phylogenetic perspective.  Writing an annual review is a huge undertaking, since it is supposed to be an authoritative, insightful, complete review of an area that also helps set the agenda for what most needs to be done next.
Working together was great as usual, dividing some tasks where we are most complementary in our strengths and then working together to craft the ideas, structure, and text.  It was a great chance for us to catch up on literature, clarify our thinking, and be creative in conveying why we think using phylogenetic tools is useful way beyond where they have been used so far.  We both learned a ton, and it will be really useful in our next writing projects coming up in January through June.  We sent that off on 1 December, and now are waiting for reviews and revisions sometime in the new year.  Great thanks to the Jordano lab group at the EBD for all their tremendous support and insightful comments that really helped shape how we presented our ideas.  
I have also been really busy with grad student activities, with Heather and Sharifa finishing up, Juniper doing her qualifying exam, and Jessica and Shannon submitting grants. 

Ingrid and I got to take two field trips with people from the Jordano and Vilà labs to help bring in long-term seed traps and visit and ongoing diversity experiment that we might layer some disease work into.  These were great opportunities to spend good time in the field with the great scientists in the groups plus see some cool regions -- one full of wild olives and laurels and the other seasonal marshes. 
The research sites are too far from Sevilla for a quick visit, but close enough to be able to get in a good day's work. 

There were also lots of great birds coming in for the winter.  








Eli and I made a cheesecake for Ingrid's birthday, and a few days later we had a lovely Thanksgiving dinner with roast turkey and all the usual accompanying dishes except cranberry sauce -- there are no cranberries to be had anywhere.  We shared our dinner with friends from Eli's music conservatory, a Peruvian-Venezuelan-Spanish family of artists, with hours of lively and fun conversation. 


We also experienced two very Sevillian events -- the annual Arabian horse show (with hundreds of thousands of visitors), and yet another parade by our flat -- but this time with Jesus instead of Mary riding the platform. 

Finally, it was time to head back to California for a mid-sabbatical visit.  We discovered that we made flight arrangements for a Wednesday many months ago, but that Eli had that Monday and Tuesday as a "super puente", days off of school.  So we found a great air b-n-b in Madrid and headed north on the super-fast AVE train on Sunday to spend a few days visiting museums before flying out.  Wonderful collections of Goya (here shown, not too happy with the treatment he gets from pigeons), Picasso (really cool to see Guernica in person), El Greco, El Bosco, Velázquez, Dali, and more.  Both El Prado and the Reina Sophia museums were like thumbing through my old art history text books. 
We even got to row a boat around a lake -- Eli's first time rowing! Oh, and really great churros con chocolate -- hot chocolate so thick it verges on warm pudding!


 

Sunday, November 8, 2015

Tourists at home

We spent this weekend (besides cleaning the flat) being tourists in Sevilla. 
Friday night, while Elias wandered Sevilla quedando with his school class, Ingrid and I had a great date for tapas at the old Las Golondrinas (we've gone to the new one next door a couple times, but this was our first time in the original).  Same great food, older (and beautiful and busy) atmosphere.

Saturday afternoon we walked up the river to the Centro Andaluz de Arte Contemporaneo, which was a remodeled monestery (Cartujo), remodeled military site, remodeled pottery factory, and finally, remodeled as an art museum in the 1990s.  The building itself is wonderful, including the chimneys remaining from the days as a pottery factory.   We bike/skate past it every time we go to the EBD, but hadn't taken the time to do more than peak in before.

The displays were really interesting, mostly based around videos.  Some work focused on 1950s French short films by Alain Resnais were great, including one of the National Library in Paris and another on Picasso's Guernica.  Elias was really taken by films from the Occupy movement in various countries by Oliver Ressler, showing footage inside political street protests.  This sparked a great discussion on the way home about protest, civil disobedience, personal responsibility for disobedience, and the difficulties in intervention by powerful countries in problems of smaller countries.  Art at its best to get you thinking. 


Ingrid, Eli, and Christopher C.
Sunday we ¡finally! went to the Catedral de Sevilla and the Giralda, the towering symbol of Sevilla.  The Cathedral dates to the 14th century, claim to the be 3rd largest in the world, and houses tremendous art and, among many others, the mausoleum of Christopher Columbus (Cristóbal Colón). 



The gothic ornamentation everywhere was over the top. 

Besides lots of Virgins, gory Jesuses, and even the severed head of John the Baptist, there was some quite impressive art. 






The view from the top of the Giralda (originally a minaret before the fall of Sevilla to the Christians), across all of Sevilla was spectacular.  We picked an unusually warm and sunny day for the season and were well rewarded with the views.








 

Monday, November 2, 2015

Gibraltar

We took advantage of the long weekend for Día de Todos los Santos to explore more of Andalucía, this time to the southernmost part of Spain by Algeciras and the United Kingdom enclave of Gibraltar.  We stayed in an Air B&B in kind of up-scale development south of Algeciras, with a beautiful view of Africa, just a long swim away.
 A big bonus, for Elias, was that the place came with a super-friendly cat.  Not so great for Ingrid (cat allergy), but Negri mostly lived outside, and came in to cuddle with Eli -- especially Monday morning, when Eli woke up with something flu-ish (by Monday night, he was deep in cold-mode but the flu symptoms had passed).

Naturally, it was a rainy vacation weekend.  Saturday, we went for a morning walk at the Botanic Garden and an afternoon walk on trails in the Parque Nacional Alcornoques,  which is a park full of beautiful cork oaks.  And not a few cows and goats.

Sunday, it threatened lots of up to 9 cm (3.5 inches) of rain, but in the morning it looked just blustery, so we decided it wasn't a good idea to hike more in the forest, and that instead we would go visit nearby Gibraltar.  Gibraltar is a big rock filled with limestone caves (including one that was set up for a military hospital and is now a concert hall), and a city of 30,000 British citizens, part of the UK since 1704.

It is also the home of several hundred Barbary Macaques, descendants of north-African Macaques (once ranging as far north as England) but now semi-wild, fed fruits and veggies by the British government since the time of Churchill.
They are completely habituated to tourists, but the £1,000 fine for feeding them keeps them one-step removed from  being pets.

We came down from the rock to city center, and went off in search of some British food at a pub dating from the 18th century -- chicken pie with boiled cabbage, peas, chips, and for Ingrid, brown gravy.  Soon after it started raining, first just rain, then a serious, torrential downpour.  The report is that they had 36 mm  (1.4") of rain in 30 min!

By then we were already wet so we kept walking back toward the border with Spain.  We got to near the stretch where you had to walk across the airport runway, but the thunder and lightening got pretty thick, and the streets were completely flooded.  We decided walking that last bit wouldn't be our brightest moment.

We asked where to catch a bus that last 500m to the border, and it turns out it was just 50m down the street, so we headed there, walking through deep water.  By the time we reached the bus stop, the water had flooded beyond the street to calf-deep, so we climbed up on the bench to be out of the water.

A big garbage can next to the bus stop started floating around in the wake of passing vehicles.  Finally a bus came by, we flagged it down, and it took us to the border, where we dripped through customs, and walked back to our rental car on the Spanish side.
Driving back many streets were flooded, but after about 15 min we had gone up enough in elevation to be out of the flood zone.     Quite a weekend adventure!